Basic Information
Locus ID:
nbisL1-mrna-7966
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
disease resistance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 26454032 | 26463865 | + | nbisL1-mrna-7966 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 125,794.97 Da | 40.79 | 103.13 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 172 | 395 | 3.1E-42 | IPR002182 |
| SUPERFAMILY | SSF52047 | RNI-like | 769 | 1069 | 3.37E-15 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 468 | 860 | 9.18E-30 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 151 | 409 | 1.76E-46 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 474 | 667 | 1.3E-25 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 312 | 398 | 2.9E-16 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 883 | 1082 | 9.7E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 668 | 882 | 2.9E-10 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 153 | 308 | 1.8E-31 | IPR027417 |
| SMART | SM00382 | AAA_5 | 177 | 313 | 2.2E-4 | IPR003593 |
| PRINTS | PR00364 | Disease resistance protein signature | 622 | 638 | 2.3E-21 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 253 | 267 | 2.3E-21 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 345 | 359 | 2.3E-21 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 180 | 195 | 2.3E-21 | - |
| Coils | Coil | Coil | 36 | 70 | - | - |
| Coils | Coil | Coil | 75 | 95 | - | - |
| Coils | Coil | Coil | 232 | 259 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27190.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_015576964.2 | - | 0 |
| Q9T048 | Disease resistance protein At4g27190 OS=Arabidopsis thaliana OX=3702 GN=At4g27190 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MMH8 | Putative disease resistance protein At4g27220 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology