Basic Information
Locus ID:
nbisL1-mrna-7960
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Disease resistance protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 26260420 | 26376838 | + | nbisL1-mrna-7960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 126,782.27 Da | 41.03 | 102.95 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 166 | 402 | 2.0E-35 | IPR002182 |
| SUPERFAMILY | SSF52058 | L domain-like | 476 | 869 | 1.9E-28 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 778 | 1072 | 3.14E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 151 | 417 | 7.77E-43 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 887 | 1081 | 8.0E-14 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 154 | 320 | 2.9E-30 | IPR027417 |
| Gene3D | G3DSA:1.10.8.430 | - | 323 | 405 | 1.9E-10 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 671 | 884 | 1.6E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 507 | 670 | 2.8E-23 | IPR032675 |
| SMART | SM00382 | AAA_5 | 177 | 500 | 0.0056 | IPR003593 |
| PRINTS | PR00364 | Disease resistance protein signature | 180 | 195 | 1.3E-18 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 624 | 640 | 1.3E-18 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 353 | 367 | 1.3E-18 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 253 | 267 | 1.3E-18 | - |
| Coils | Coil | Coil | 668 | 688 | - | - |
| Coils | Coil | Coil | 75 | 95 | - | - |
| Coils | Coil | Coil | 36 | 56 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27190.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_025013768.2 | uncharacterized protein LOC8266842 isoform X3 [Ricinus communis] | 0 |
| Q9T048 | Disease resistance protein At4g27190 OS=Arabidopsis thaliana OX=3702 GN=At4g27190 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2MMH8 | Putative disease resistance protein At4g27220 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology