Basic Information
Locus ID:
nbisL1-mrna-7952
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Myosin heavy chain kinase B-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002078F_pilon | 2992087 | 2993409 | - | nbisL1-mrna-7952 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 49,646.29 Da | 48.74 | 74.16 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 69 | 393 | 6.13429E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 341 | 0.0084 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 212 | 248 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 350 | 392 | 0.12 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 296 | 0.044 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 206 | 0.013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 67 | 206 | 7.14E-15 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 177 | 394 | 5.5E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 53 | 166 | 3.8E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 173 | 422 | 4.2E-43 | IPR015943 |
| SMART | SM00320 | WD40_4 | 210 | 249 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 297 | 6.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 106 | 143 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 304 | 341 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 393 | 0.072 | IPR001680 |
| SMART | SM00320 | WD40_4 | 168 | 207 | 0.0056 | IPR001680 |
| SMART | SM00320 | WD40_4 | 66 | 103 | 0.74 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 297 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 350 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 311 | 341 | 8.623787 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 175 | 216 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 217 | 248 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 217 | 248 | 9.230148 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 194 | 208 | 7.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 328 | 342 | 7.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 130 | 144 | 7.5E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04218 (Cellular senescence)
map04218 (Cellular senescence)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04340 (Hedgehog signaling pathway)
map04340 (Hedgehog signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G24130.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_022731744.1 | - | 0 |
| O48716 | Protein JINGUBANG OS=Arabidopsis thaliana OX=3702 GN=JGB PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P5XU55 | protein JINGUBANG-like OS=Durio zibethinus OX=66656 GN=LOC111286182 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology