Basic Information
Locus ID:
nbisL1-mrna-7941
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 9408797 | 9411130 | + | nbisL1-mrna-7941 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 51,354.04 Da | 50.82 | 82.45 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 104 | 425 | 1.6E-91 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 68 | 462 | 1.29E-128 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 64 | 461 | 6.3E-123 | IPR012334 |
| SMART | SM00710 | pbh1 | 348 | 369 | 1200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 289 | 309 | 5200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 319 | 340 | 24.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 216 | 265 | 2200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 266 | 287 | 70.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 296 | 309 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_011039005.1 | PREDICTED: polygalacturonase At1g48100-like [Populus euphratica] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X8D0E2 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_020301 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology