Basic Information
Locus ID:
nbisL1-mrna-7941
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000110F_pilon | 3847574 | 3851002 | - | nbisL1-mrna-7941 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 75,557.22 Da | 49.38 | 99.19 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 492 | 513 | 0.68 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 344 | 394 | 8.6E-7 | IPR001611 |
| Pfam | PF02826 | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | 545 | 646 | 1.4E-26 | IPR006140 |
| Pfam | PF13855 | Leucine rich repeat | 105 | 147 | 6.5E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 105 | 445 | 8.96E-39 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 472 | 513 | 5.27E-5 | - |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 545 | 647 | 1.63E-26 | IPR036291 |
| SUPERFAMILY | SSF52058 | L domain-like | 233 | 347 | 2.04E-11 | - |
| Gene3D | G3DSA:3.40.50.720 | - | 538 | 649 | 2.1E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 457 | 525 | 1.8E-10 | IPR032675 |
| Gene3D | G3DSA:3.40.50.720 | - | 650 | 673 | 2.1E-53 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 328 | 4.2E-47 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 332 | 456 | 4.1E-27 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 490 | 518 | 44.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 405 | 429 | 390.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 357 | 381 | 4.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 206 | 229 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 134 | 158 | 18.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 111 | 132 | 7.049695 | IPR001611 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko00260 (Glycine, serine and threonine metabolism)
map00260 (Glycine, serine and threonine metabolism)
ko00630 (Glyoxylate and dicarboxylate metabolism)
map00630 (Glyoxylate and dicarboxylate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79870.2 | D-isomer specific 2-hydroxyacid dehydrogenase family protein. | 0 |
| RefSeq | XP_021610414.1 | receptor like protein 21-like [Manihot esculenta] | 0 |
| A5CAL1 | Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR OS=Vitis vinifera OX=29760 GN=2KGR PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8IP81 | LRR receptor-like serine/threonine-protein kinase FLS2 OS=Gossypium hirsutum OX=3635 GN=LOC107898869 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology