Basic Information
Locus ID:
nbisL1-mrna-7927
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
divergent subfamily of APPLE domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000110F_pilon | 3709193 | 3710536 | + | nbisL1-mrna-7927 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 50,801.96 Da | 42.46 | 81.77 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08276 | PAN-like domain | 376 | 413 | 5.7E-10 | IPR003609 |
| Pfam | PF01453 | D-mannose binding lectin | 142 | 242 | 3.1E-22 | IPR001480 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 141 | 237 | 2.88E-18 | IPR036426 |
| Gene3D | G3DSA:2.90.10.10 | - | 66 | 215 | 2.0E-14 | IPR036426 |
| SMART | SM00108 | blect_4 | 71 | 218 | 2.9E-9 | IPR001480 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 71 | 211 | 12.082623 | IPR001480 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 350 | 431 | 8.246512 | IPR003609 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16030.3 | - | 0 |
| RefSeq | XP_020535352.1 | G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas] | 0 |
| Q9LW83 | G-type lectin S-receptor-like serine/threonine-protein kinase CES101 OS=Arabidopsis thaliana OX=3702 GN=CES101 PE=2 SV=2 | 0 | |
| TrEMBL | B9RQP9 | Receptor-like serine/threonine-protein kinase OS=Ricinus communis OX=3988 GN=RCOM_1494620 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah018508 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044267 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30036830, pistato.v30036880, pistato.v30036890 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G67520.1, AT3G16030.1 |
| Brassicaceae | Brassica nigra | 3 | BniB01g048880.2N, BniB03g025090.2N, BniB07g053710.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005846 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.496 |
| Rhizophoraceae | Carallia pectinifolia | 8 | nbisL1-mrna-27876, nbisL1-mrna-27877, nbisL1-mrna-27878 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10731, nbisL1-mrna-10732 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7927 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-19668 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21281 |