Basic Information
Locus ID:
nbisL1-mrna-7920
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002078F_pilon | 2796223 | 2798168 | - | nbisL1-mrna-7920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 64,943.01 Da | 50.96 | 92.39 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 24 | 59 | 4.0E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 102 | 9.42E-10 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 133 | 400 | 3.63E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 118 | 406 | 6.2E-16 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 8 | 100 | 7.5E-6 | - |
| SMART | SM00256 | fbox_2 | 27 | 67 | 0.0026 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 21 | 68 | 11.246099 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G56380.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_015573065.1 | uncharacterized protein LOC8271232 [Ricinus communis] | 0 |
| TrEMBL | B9RS73 | F-box domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0803460 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G2233, Ceq07G1992 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G2490, Cgl01G2516, Cgl01G2517, Cgl07G2181 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.795 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13688 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11911 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9044 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.124 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003964 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18265 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7920 |
| Salicaceae | Populus euphratica | 5 | populus_peu09581, populus_peu12799, populus_peu12841 ... |