Basic Information
Locus ID:
nbisL1-mrna-7908
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 9187269 | 9191564 | + | nbisL1-mrna-7908 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 81,376.26 Da | 48.88 | 76.86 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 278 | 475 | 1.03914E-100 | - |
| CDD | cd18794 | SF2_C_RecQ | 476 | 609 | 4.0049E-65 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 491 | 599 | 2.2E-16 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 692 | 722 | 7.4E-7 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 286 | 454 | 3.1E-17 | IPR011545 |
| Pfam | PF12023 | Domain of unknown function (DUF3511) | 49 | 79 | 2.3E-12 | IPR021899 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 323 | 619 | 2.08E-52 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 689 | 727 | 1.5E-6 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 246 | 475 | 8.1E-84 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 476 | 684 | 2.6E-52 | IPR027417 |
| SMART | SM00487 | ultradead3 | 280 | 484 | 4.9E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 518 | 600 | 6.0E-23 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 278 | 667 | 5.5E-143 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 292 | 468 | 21.229099 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 490 | 640 | 18.839466 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 407 | 416 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 222 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_021645845.1 | ATP-dependent DNA helicase Q-like 1 [Hevea brasiliensis] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A837A6J4 | ATP-dependent DNA helicase OS=Salix suchowensis OX=1278906 GN=IMY05_005G0015300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology