Basic Information
Locus ID:
nbisL1-mrna-7900
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 25570900 | 25575811 | - | nbisL1-mrna-7900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 111,538.64 Da | 33.54 | 102.00 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 508 | 530 | 0.29 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 72 | 3.7E-8 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 710 | 978 | 1.0E-45 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 532 | 591 | 8.1E-9 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 291 | 306 | 1.8 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 255 | 596 | 1.65E-70 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 691 | 983 | 9.16E-70 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 52 | 353 | 7.14E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 316 | 627 | 1.3E-87 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 791 | 1005 | 4.7E-58 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 184 | 1.7E-38 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 253 | 315 | 7.2E-17 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 708 | 790 | 5.4E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 185 | 252 | 9.5E-20 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 266 | 290 | 90.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 708 | 983 | 7.6E-33 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 314 | 338 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 434 | 458 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 98 | 122 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 554 | 578 | 350.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 506 | 530 | 90.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 194 | 218 | 17.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 708 | 990 | 37.968884 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 833 | 845 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 714 | 738 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08590.1 | Leucine-rich receptor-like protein kinase family protein. similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888) | 0 |
| RefSeq | XP_048236074.1 | leucine-rich repeat receptor-like protein kinase PXL1 [Ricinus communis] | 0 |
| Q9FRS6 | Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana OX=3702 GN=PXL1 PE=1 SV=1 | 0 | |
| TrEMBL | B9S7N4 | Protein kinase domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0610070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology