Basic Information
Locus ID:
nbisL1-mrna-7899
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Transcriptional regulator
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 25540535 | 25557774 | - | nbisL1-mrna-7899 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 168,669.98 Da | 50.08 | 77.83 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11726 | ADDz_ATRX | 476 | 572 | 3.26251E-38 | - |
| CDD | cd18793 | SF2_C_SNF | 1106 | 1249 | 5.52591E-51 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1114 | 1238 | 7.2E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 731 | 1034 | 1.1E-49 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 698 | 964 | 1.37E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 970 | 1307 | 1.52E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 682 | 964 | 7.0E-76 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 975 | 1326 | 1.4E-72 | IPR027417 |
| SMART | SM00487 | ultradead3 | 706 | 927 | 8.3E-22 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1141 | 1238 | 5.2E-18 | IPR001650 |
| ProSiteProfiles | PS51533 | ADD domain profile. | 468 | 598 | 12.193827 | IPR025766 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 732 | 915 | 16.853069 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1118 | 1286 | 15.737299 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1395 | 1436 | - | - |
| Coils | Coil | Coil | 1357 | 1377 | - | - |
| Coils | Coil | Coil | 105 | 132 | - | - |
| Coils | Coil | Coil | 366 | 386 | - | - |
| Coils | Coil | Coil | 47 | 67 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08600.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_012089375.1 | protein CHROMATIN REMODELING 20 isoform X3 [Jatropha curcas] | 0 |
| F4HW51 | Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana OX=3702 GN=ATRX PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2MV44 | ATP-dependent helicase ATRX OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2716 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10347 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005595 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g077440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17305, Sbi_jg61941 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg561 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015470 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24355, Sgl24363, Sgl29528, Sgl29539 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000009165, gene:ENSEOMG00000028688 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0006760, CQ.Regalona.r1.4BG0006890 |
| Apiaceae | Apium graveolens | 1 | Ag8G01171 |
| Arecaceae | Cocos nucifera | 1 | scaffold001442G000100 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720147 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.300.V1.1, AsparagusV1_04.301.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G15386 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G08600.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006555m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g07260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g004270.2N, BniB04g031090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2408 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2527 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g01910 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g17930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-7901, nbisL1-mrna-7903 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2177 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012773 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06456 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.2180, CH01.2274 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0126760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0040050.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011271 |
| Poaceae | Oryza coarctata | 2 | Oco19G005350, Oco20G005280 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G215300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0502490, Pt_Chr0502493, Pt_Chr0502494 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G013430, Chr15G016210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G267300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG021840, gene_TRIDC1BG025970 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G144000.3, TraesCS1B02G161400.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb046650_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21251 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13338 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG22.1131 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g06480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.331 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7899 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8969 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5379 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.217 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011053 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7743 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-300 |
| Salicaceae | Populus euphratica | 4 | populus_peu15998, populus_peu19501, populus_peu25237 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616152 |
| Solanaceae | Solanum chilense | 1 | SOLCI002257600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017879 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17982 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0883 |
| Zosteraceae | Zostera marina | 1 | Zosma03g24490.v3.1 |