Basic Information
Locus ID:
nbisL1-mrna-7897
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000110F_pilon | 3550213 | 3551277 | + | nbisL1-mrna-7897 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 39,115.97 Da | 37.84 | 74.63 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 155 | 201 | 8.1E-7 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 111 | 152 | 3.2E-7 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 79 | 341 | 3.53E-39 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 21 | 350 | 2.3E-38 | IPR015915 |
| SMART | SM00612 | kelc_smart | 168 | 215 | 7.8E-5 | IPR006652 |
| SMART | SM00612 | kelc_smart | 117 | 165 | 0.0012 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15670.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_021665325.1 | F-box/kelch-repeat protein At1g80440-like [Hevea brasiliensis] | 0 |
| Q9LMR5 | F-box/kelch-repeat protein At1g15670 OS=Arabidopsis thaliana OX=3702 GN=At1g15670 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6M2E6K1 | F-box domain-containing protein OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology