Basic Information
Locus ID:
nbisL1-mrna-7896
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 9109258 | 9125251 | + | nbisL1-mrna-7896 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 239,853.50 Da | 48.82 | 83.12 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 446 | 479 | 0.0067 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 909 | 941 | 0.0034 | IPR001680 |
| Pfam | PF01399 | PCI domain | 1504 | 1639 | 7.1E-18 | IPR000717 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 484 | 1039 | 2.9E-42 | IPR011047 |
| SUPERFAMILY | SSF101908 | Putative isomerase YbhE | 327 | 556 | 1.96E-27 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 966 | 1117 | 2.93E-9 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 325 | 383 | 2.9E-5 | IPR015943 |
| Gene3D | G3DSA:1.25.40.860 | - | 1484 | 1625 | 9.5E-32 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 958 | 1130 | 3.8E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 405 | 674 | 4.9E-34 | IPR015943 |
| Gene3D | G3DSA:1.25.40.860 | - | 1400 | 1474 | 1.7E-18 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 734 | 957 | 4.2E-25 | IPR015943 |
| Gene3D | G3DSA:4.10.860.10 | UVR domain | 1348 | 1399 | 1.3E-26 | - |
| SMART | SM00320 | WD40_4 | 438 | 479 | 0.0015 | IPR001680 |
| SMART | SM00320 | WD40_4 | 903 | 942 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1052 | 1089 | 100.0 | IPR001680 |
| SMART | SM00753 | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 1572 | 1663 | 1.4E-4 | - |
| SMART | SM00320 | WD40_4 | 992 | 1034 | 10.0 | IPR001680 |
| SMART | SM00088 | PINT_4 | 1572 | 1663 | 1.4E-4 | IPR000717 |
| SMART | SM00320 | WD40_4 | 481 | 522 | 0.054 | IPR001680 |
| SMART | SM00320 | WD40_4 | 333 | 372 | 4.5E-4 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.2E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 821 | 857 | 370.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 860 | 900 | 0.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 393 | 433 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 571 | 612 | 0.31 | IPR001680 |
| SMART | SM00320 | WD40_4 | 525 | 568 | 130.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.1E-4 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.303383 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.019655 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 585 | 621 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 445 | 488 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 910 | 945 | 10.284687 | - |
| ProSiteProfiles | PS50250 | PCI domain profile. | 1424 | 1644 | 14.937046 | IPR000717 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 910 | 951 | 12.847725 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 339 | 373 | 8.887423 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 339 | 381 | 10.775796 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 466 | 480 | - | IPR019775 |
| Hamap | MF_03000 | Eukaryotic translation initiation factor 3 subunit A [EIF3A]. | 1132 | 2094 | 27.432659 | IPR027512 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1944 | 2124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2031 | 2052 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1944 | 1993 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2064 | 2078 | - | - |
| Coils | Coil | Coil | 1792 | 1829 | - | - |
| Coils | Coil | Coil | 1929 | 1988 | - | - |
| Coils | Coil | Coil | 1746 | 1773 | - | - |
| Coils | Coil | Coil | 1224 | 1251 | - | - |
| Coils | Coil | Coil | 1692 | 1731 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021622866.1 | topless-related protein 3 [Manihot esculenta] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MSI8 | Topless-related protein 3 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16861, jg26542 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10384, gene_8377 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah000755, Ah024601 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g076280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17204, Sbi_jg61808 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg463 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015389 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24426, Sgl29601 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000011829, gene:ENSEOMG00000013177 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.1AG0015440, CQ.Regalona.r1.1BG0010550 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30081840 |
| Apiaceae | Apium graveolens | 3 | Ag11G03600, Ag3G01383, Ag3G01961 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G002930, COCNU_12G003410 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103703468, gene-LOC103720979 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1856.V1.1, AsparagusV1_04.908.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G28393 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G11420.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10026980m.g.v1.0, Thhalv10028395m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06010.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g080400.2N, BniB05g057140.2N, BniB08g036550.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq06G1141, Ceq08G1192 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G1188, Cgl08G1225 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g00950 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0995s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g02580, gene.Thate02g02590, gene.Thate03g17660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-8254, nbisL1-mrna-8255 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG03.2501, evm.TU.LG03.2502, evm.TU.LG07.452 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002164, Pov_00039735 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G07108, Lb6G31685, Lb7G33334, Lb7G33335, Lb7G33342 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1209, BH02.881, CH02.1009 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0007620, gene-QOZ80_1BG0056390 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0224450.1, HORVU.MOREX.r3.7HG0646350.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031437, gene-QYE76_049285 |
| Poaceae | Oryza coarctata | 2 | Oco01G000820, Oco02G000890 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G084000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0203543, Pt_Chr0205441, Pt_Chr0306673 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G024690, Chr03G003230, Chr05G002540, Chr08G001790 |
| Poaceae | Thinopyrum elongatum | 5 | Tel3E01G045700, Tel5E01G100000, Tel7E01G151100 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC3AG000570, gene_TRIDC3BG003320 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS3A02G025500.1, TraesCS3B02G019500.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb121480_P002, Zm00001eb337210_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7106 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g9868 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.835, evm.TU.LG08.836, evm.TU.LG22.1088 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g18080, gene.Posoc04g00260 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.85 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8191 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5162 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5171 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.62 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011346 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7896 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-76 |
| Salicaceae | Populus euphratica | 3 | populus_peu13323, populus_peu15642, populus_peu15643 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607057, gene-LOC132630267 |
| Solanaceae | Solanum chilense | 2 | SOLCI003893900, SOLCI004221500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002579, gene-LOC107030958 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31399_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2478, TC09G1887 |
| Zosteraceae | Zostera marina | 1 | Zosma06g01990.v3.1 |