Basic Information
Locus ID:
nbisL1-mrna-7891
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
C1 domain
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 25493163 | 25495903 | + | nbisL1-mrna-7891 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 52,337.33 Da | 46.04 | 78.66 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 76 | 124 | 5.3E-10 | IPR004146 |
| Pfam | PF03107 | C1 domain | 145 | 188 | 3.8E-7 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 170 | 247 | 2.09E-14 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 290 | 373 | 4.71E-9 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 44 | 126 | 2.75E-20 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 224 | 310 | 4.04E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 421 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 454 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21830.2 | - | 0 |
| RefSeq | XP_034916921.1 | - | 0 |
| TrEMBL | A0A4U5QLC3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G21810.1, AT2G21830.1, AT2G21840.1, AT2G21850.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000096m.g.v1.0, Thhalv10000100m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01290.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064140.2N, BniB05g064170.2N, BniB07g028200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1160 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0001 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12109, nbisL1-mrna-5028, nbisL1-mrna-5029 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG17.926 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1892 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-3275, nbisL1-mrna-3288, nbisL1-mrna-3294 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13823, nbisL1-mrna-5376 |
| Salicaceae | Populus euphratica | 5 | populus_peu08735, populus_peu19514, populus_peu19515 ... |