Basic Information
Locus ID:
nbisL1-mrna-7868
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 47853385 | 47855357 | + | nbisL1-mrna-7868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 21,610.42 Da | 36.25 | 65.15 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 14 | 187 | 1.5E-83 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 67 | 177 | 7.46E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 72 | 190 | 1.1E-43 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 77 | 178 | 23.709414 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 0 |
| RefSeq | XP_016669531.1 | auxin-responsive protein IAA16 [Gossypium hirsutum] | 0 |
| O24407 | Auxin-responsive protein IAA16 OS=Arabidopsis thaliana OX=3702 GN=IAA16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2NH42 | Auxin-responsive protein OS=Gossypium tomentosum OX=34277 GN=ES332_A11G286700v1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology