Basic Information
Locus ID:
nbisL1-mrna-7863
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
EBF2
Description:
EIN3-binding F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002078F_pilon | 2480695 | 2482665 | - | nbisL1-mrna-7863 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.62 | 70,355.60 Da | 43.70 | 105.06 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 278 | 301 | 1.3 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 227 | 250 | 0.0046 | IPR001611 |
| Pfam | PF00646 | F-box domain | 68 | 108 | 5.9E-7 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 571 | 593 | 0.0085 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 252 | 275 | 0.23 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 64 | 105 | 7.72E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 185 | 429 | 3.73E-36 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 318 | 652 | 6.87E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 174 | 411 | 5.0E-50 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 61 | 108 | 5.7E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 456 | 542 | 3.2E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 543 | 656 | 1.8E-18 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 518 | 545 | 220.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 571 | 595 | 0.005 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 411 | 436 | 98.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 279 | 304 | 0.0051 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 359 | 384 | 3.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 465 | 490 | 3.0E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 385 | 410 | 0.48 | IPR006553 |
| SMART | SM00256 | fbox_2 | 71 | 111 | 1.0E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 548 | 570 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 491 | 516 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 227 | 252 | 5.5E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 201 | 226 | 0.0043 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 253 | 278 | 1.6E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 597 | 622 | 0.052 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_021665595.1 | EIN3-binding F-box protein 1-like [Hevea brasiliensis] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2K6Y0 | Grr1 plant OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology