Basic Information
Locus ID:
nbisL1-mrna-7847
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002078F_pilon | 2364906 | 2369122 | - | nbisL1-mrna-7847 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 59,383.13 Da | 25.73 | 106.42 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 231 | 333 | 9.7394E-24 | - |
| CDD | cd00030 | C2 | 405 | 505 | 3.01999E-24 | - |
| Pfam | PF00168 | C2 domain | 403 | 504 | 6.1E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 37 | 215 | 1.8E-14 | IPR039010 |
| Pfam | PF00168 | C2 domain | 230 | 333 | 3.2E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 227 | 358 | 4.32E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 399 | 522 | 8.63E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 225 | 366 | 3.8E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 386 | 522 | 1.0E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 404 | 502 | 1.8E-20 | IPR000008 |
| SMART | SM00239 | C2_3c | 230 | 330 | 3.4E-20 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 385 | 503 | 19.39114 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 32 | 216 | 30.495529 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 210 | 331 | 19.547379 | IPR000008 |
| Coils | Coil | Coil | 382 | 402 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_015572574.1 | synaptotagmin-4 [Ricinus communis] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2KN44 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology