Basic Information
Locus ID:
nbisL1-mrna-7816
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000110F_pilon | 2690180 | 2739710 | + | nbisL1-mrna-7816 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 296,211.81 Da | 38.43 | 96.64 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 1508 | 1563 | 2.0E-9 | IPR001611 |
| Pfam | PF00400 | WD domain, G-beta repeat | 760 | 793 | 0.0068 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 328 | 360 | 0.19 | IPR001680 |
| Pfam | PF13855 | Leucine rich repeat | 1369 | 1424 | 2.5E-6 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 1987 | 2009 | 1.7 | IPR001611 |
| Pfam | PF02492 | CobW/HypB/UreG, nucleotide-binding domain | 2535 | 2603 | 4.1E-7 | IPR003495 |
| Pfam | PF00560 | Leucine Rich Repeat | 1938 | 1960 | 0.2 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 1320 | 1338 | 0.38 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 1025 | 1046 | 0.15 | IPR001611 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 278 | 373 | 2.75E-6 | IPR011047 |
| SUPERFAMILY | SSF52058 | L domain-like | 2368 | 2433 | 3.33E-9 | - |
| SUPERFAMILY | SSF51004 | C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 734 | 940 | 1.2E-14 | IPR011048 |
| SUPERFAMILY | SSF52058 | L domain-like | 967 | 1431 | 5.61E-45 | - |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 360 | 798 | 2.98E-35 | IPR011047 |
| SUPERFAMILY | SSF52058 | L domain-like | 1318 | 1618 | 1.19E-52 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1508 | 1811 | 1.12E-36 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1819 | 2274 | 1.41E-52 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 2533 | 2618 | 2.3E-10 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1066 | 1265 | 7.2E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 954 | 1065 | 8.0E-27 | IPR032675 |
| Gene3D | G3DSA:2.130.10.10 | - | 273 | 360 | 5.4E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 671 | 945 | 1.7E-27 | IPR015943 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 2362 | 2439 | 3.7E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1266 | 1626 | 1.8E-98 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1910 | 2292 | 1.8E-100 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1630 | 1909 | 2.2E-53 | IPR032675 |
| Gene3D | G3DSA:2.130.10.10 | - | 361 | 539 | 1.4E-11 | IPR015943 |
| SMART | SM00365 | LRR_sd22_2 | 1692 | 1722 | 210.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 974 | 997 | 210.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1270 | 1289 | 500.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 998 | 1025 | 480.0 | - |
| SMART | SM00369 | LRR_typ_2 | 1072 | 1093 | 400.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 998 | 1022 | 96.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1270 | 1293 | 73.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1526 | 1549 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1912 | 1935 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 2194 | 2217 | 70.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 1072 | 1090 | 180.0 | - |
| SMART | SM00369 | LRR_typ_2 | 2218 | 2242 | 50.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1936 | 1960 | 120.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1550 | 1574 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1340 | 1364 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 1388 | 1412 | 9.2 | IPR003591 |
| SMART | SM00320 | WD40_4 | 321 | 362 | 0.37 | IPR001680 |
| SMART | SM00320 | WD40_4 | 671 | 708 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 711 | 751 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 423 | 463 | 1.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 754 | 793 | 5.4E-6 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 377 | 420 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 844 | 885 | 15.0 | IPR001680 |
| SMART | SM00369 | LRR_typ_2 | 1023 | 1047 | 5.1 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 1667 | 1686 | 390.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 2080 | 2106 | 640.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1912 | 1944 | 670.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1412 | 1438 | 160.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 1047 | 1065 | 400.0 | - |
| SMART | SM00369 | LRR_typ_2 | 2056 | 2080 | 55.0 | IPR003591 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.2E-15 | IPR006595 |
| SMART | SM00365 | LRR_sd22_2 | 1550 | 1576 | 200.0 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 441 | 472 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 761 | 793 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 761 | 793 | 10.100143 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.141059 | IPR006595 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_015573796.2 | topless-related protein 1 isoform X1 [Ricinus communis] | 0 |
| Q94AI7 | Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1 | 0 | |
| TrEMBL | B9RVD2 | WD-repeat protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0902410 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology