Basic Information
Locus ID:
nbisL1-mrna-7812
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002078F_pilon | 2101377 | 2109219 | - | nbisL1-mrna-7812 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 97,998.18 Da | 46.76 | 64.22 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04508 | TUDOR | 627 | 673 | 0.00929139 | IPR002999 |
| SUPERFAMILY | SSF48371 | ARM repeat | 65 | 268 | 3.89E-7 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 624 | 664 | 1.28E-6 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 623 | 673 | 6.7E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 539 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 765 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 574 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 823 | 855 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 711 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 727 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 903 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 783 | 822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 856 | 903 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_043807719.1 | titin homolog isoform X2 [Manihot esculenta] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LRD6 | Tudor domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology