halophFGD

Basic Information

Locus ID: nbisL1-mrna-7809

Species & Taxonomic ID: Rhizophora mangle & 40031

Genome Assembly: GCA_037832345.1

Description: PWWP domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
002078F_pilon	2049400	2053822	+	nbisL1-mrna-7809

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.44	156,047.19 Da	43.69	73.41	-0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05162	PWWP	862	948	8.76312E-29	-
Pfam	PF00855	PWWP domain	862	948	5.8E-16	IPR000313
SUPERFAMILY	SSF63748	Tudor/PWWP/MBT	858	963	1.75E-25	-
Gene3D	G3DSA:2.30.30.140	-	853	955	1.9E-25	-
SMART	SM00293	PWWP_4	862	923	6.6E-9	IPR000313
ProSiteProfiles	PS50812	PWWP domain profile.	864	925	14.666435	IPR000313
MobiDBLite	mobidb-lite	consensus disorder prediction	1279	1313	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1047	1085	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1283	1313	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1098	1121	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT5G02950.1	Tudor/PWWP/MBT superfamily protein.
RefSeq	XP_021644087.1	uncharacterized protein LOC110638000 isoform X1 [Hevea brasiliensis]
Swiss-Prot	Q9LYZ0	PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1
TrEMBL	A0A2P2MS56	Dentin sialophosphoprotein OS=Rhizophora mucronata OX=61149 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg14608, jg17788, jg19843, jg2728, jg2729, jg32064
Aizoaceae	Mesembryanthemum crystallinum	2	gene_12995, gene_19993
Amaranthaceae	Atriplex hortensis	2	Ah003579, Ah004231
Amaranthaceae	Beta vulgaris	2	BVRB_3g061970, BVRB_5g101890
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg24462, Sbi_jg27579, Sbi_jg32950, Sbi_jg4629 ... Sbi_jg7446, Sbi_jg8309
Amaranthaceae	Salicornia europaea	3	Seu_jg11730, Seu_jg12583, Seu_jg7729
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001341, GOSA_00001639
Amaranthaceae	Suaeda glauca	6	Sgl51403, Sgl51795, Sgl56646, Sgl57102, Sgl71535, Sgl75114
Amaranthaceae	Chenopodium album	12	gene:ENSEOMG00000004091, gene:ENSEOMG00000006001 ... gene:ENSEOMG00000008119, gene:ENSEOMG00000013997, gene:ENSEOMG00000020527, gene:ENSEOMG00000022556, gene:ENSEOMG00000024316, gene:ENSEOMG00000025094, gene:ENSEOMG00000030148, gene:ENSEOMG00000038156, gene:ENSEOMG00000040232, gene:ENSEOMG00000043637
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.3AG0021750, CQ.Regalona.r1.3BG0022560 ... CQ.Regalona.r1.5AG0002800, CQ.Regalona.r1.5AG0009120, CQ.Regalona.r1.5BG0002920, CQ.Regalona.r1.5BG0009470, CQ.Regalona.r1.7AG0017040, CQ.Regalona.r1.7BG0019300
Anacardiaceae	Pistacia vera	3	pistato.v30022490, pistato.v30171590, pistato.v30271950
Apiaceae	Apium graveolens	4	Ag11G04585, Ag11G04586, Ag3G02696, AgUnG01654
Arecaceae	Cocos nucifera	7	COCNU_02G007470, COCNU_04G002910, COCNU_04G014480 ... COCNU_05G010260, COCNU_12G006970, COCNU_16G006880, COCNU_16G006970
Arecaceae	Phoenix dactylifera	6	gene-LOC103702061, gene-LOC103706650, gene-LOC103708880 ... gene-LOC103711526, gene-LOC103718133, gene-LOC120103883
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.2110.V1.1, AsparagusV1_03.2111.V1.1 ... AsparagusV1_05.426.V1.1, AsparagusV1_07.364.V1.1, AsparagusV1_08.3440.V1.1
Asteraceae	Flaveria trinervia	8	Ftri16G12507, Ftri16G23879, Ftri17G22103, Ftri17G25899 ... Ftri18G04977, Ftri18G07402, Ftri18G10628, Ftri9G08131
Brassicaceae	Arabidopsis thaliana	5	AT3G09670.1, AT3G27860.1, AT3G54760.1, AT5G02950.1 ... AT5G40340.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10005709m.g.v1.0, Thhalv10010125m.g.v1.0 ... Thhalv10010166m.g.v1.0, Thhalv10015666m.g.v1.0, Thhalv10020687m.g.v1.0, Thhalv10027630m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp2g16900.v2.2, Sp3g08010.v2.2, Sp5g07670.v2.2 ... Sp5g07680.v2.2, Sp5g07690.v2.2, Sp7g01590.v2.2
Brassicaceae	Brassica nigra	6	BniB02g067960.2N, BniB03g023430.2N, BniB05g030910.2N ... BniB06g059790.2N, BniB06g065170.2N, BniB06g065210.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0660, Ceq02G0661
Casuarinaceae	Casuarina glauca	2	Cgl02G0670, Cgl02G1917
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g14570, gene.Cymno05g15770
Dunaliellaceae	Dunaliella salina	1	Dusal.2340s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g17030, gene.Thate08g12720
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-10827
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.1382, evm.TU.LG01.2818, evm.TU.LG05.357
Plantaginaceae	Plantago ovata	5	Pov_00005141, Pov_00023294, Pov_00027865, Pov_00036029 ... Pov_00040387
Plumbaginaceae	Limonium bicolor	4	Lb2G14255, Lb2G14256, Lb4G23078, Lb4G23087
Poaceae	Echinochloa crus-galli	7	AH02.4672, AH05.2116, AH05.911, BH02.4740, BH05.2253 ... CH05.1006, CH05.2333
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0048420, gene-QOZ80_1BG0098360 ... gene-QOZ80_5AG0370320, gene-QOZ80_5AG0370330, gene-QOZ80_5AG0406880, gene-QOZ80_5BG0417840, gene-QOZ80_5BG0417850, gene-QOZ80_5BG0454980
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0012850.1.CDS1 ... HORVU.MOREX.r3.1HG0012860.1.CDS1, HORVU.MOREX.r3.1HG0012870.1.CDS1, HORVU.MOREX.r3.1HG0072910.2, HORVU.MOREX.r3.1HG0072920.1, HORVU.MOREX.r3.3HG0330960.1.CDS1
Poaceae	Lolium multiflorum	5	gene-QYE76_007990, gene-QYE76_009183, gene-QYE76_009185 ... gene-QYE76_014259, gene-QYE76_058499
Poaceae	Oryza coarctata	7	Oco06G017380, Oco09G011670, Oco09G011680, Oco10G001240 ... Oco10G011640, Oco10G011650, Oco22G005540
Poaceae	Oryza sativa	4	LOC_Os05g03110.1, LOC_Os05g38800.2, LOC_Os05g38810.1 ... LOC_Os11g19810.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G420900, gene-BS78_09G025000 ... gene-BS78_09G170500
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0500068, Pt_Chr0502302, Pt_Chr0601054
Poaceae	Sporobolus alterniflorus	11	Chr01G013260, Chr01G013270, Chr01G018940, Chr02G000240 ... Chr03G023970, Chr05G034590, Chr08G017450, Chr12G023510, Chr22G006260, Chr22G006270, Chr28G005850
Poaceae	Thinopyrum elongatum	5	Tel1E01G124400, Tel1E01G124500, Tel1E01G467500 ... Tel1E01G467800, Tel3E01G914400
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG008110, gene_TRIDC1AG043100 ... gene_TRIDC1AG043120, gene_TRIDC1BG010260, gene_TRIDC1BG048900, gene_TRIDC1BG048920
Poaceae	Triticum aestivum	16	TraesCS1A02G059600.1.cds1, TraesCS1A02G059700.1.cds1 ... TraesCS1A02G288200.1, TraesCS1A02G288400.1, TraesCS1B02G077800.1.cds1, TraesCS1B02G077900.1.cds1, TraesCS1B02G297600.1, TraesCS1B02G297800.1, TraesCS1D02G060800.1.cds1, TraesCS1D02G060900.1.cds1, TraesCS1D02G287200.1, TraesCS1D02G287400.1, TraesCS3A02G538200.1, TraesCS3B02G603600.1, TraesCS3B02G603700.1.cds1, TraesCS3D02G543800.1
Poaceae	Zea mays	14	Zm00001eb049500_P001, Zm00001eb061660_P001 ... Zm00001eb083550_P001, Zm00001eb139650_P001, Zm00001eb209400_P001, Zm00001eb264800_P001, Zm00001eb289850_P002, Zm00001eb351570_P002, Zm00001eb355190_P001, Zm00001eb355200_P001, Zm00001eb362080_P001, Zm00001eb371060_P001, Zm00001eb402610_P001, Zm00001eb411240_P002
Poaceae	Zoysia japonica	8	nbis-gene-10728, nbis-gene-14171, nbis-gene-14172 ... nbis-gene-18307, nbis-gene-18308, nbis-gene-24159, nbis-gene-24160, nbis-gene-28043
Poaceae	Zoysia macrostachya	4	Zma_g12029, Zma_g27049, Zma_g27617, Zma_g28397
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.2784, evm.TU.LG04.1309, evm.TU.LG04.879 ... evm.TU.LG05.1844, evm.TU.LG05.2056
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g36070, gene.Posoc03g10190, gene.Posoc04g21070
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_10_RagTag.901, evm.TU.Scaffold_10_RagTag.902 ... evm.TU.Scaffold_11_RagTag.478, evm.TU.Scaffold_2_RagTag.844, evm.TU.Scaffold_3_RagTag.1898, evm.TU.Scaffold_6_RagTag.149, evm.TU.Scaffold_6_RagTag.150
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-14966, nbisL1-mrna-2337, nbisL1-mrna-2600 ... nbisL1-mrna-26086, nbisL1-mrna-26864, nbisL1-mrna-4356
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-18785, nbisL1-mrna-479, nbisL1-mrna-6757 ... nbisL1-mrna-8833
Rhizophoraceae	Ceriops zippeliana	8	nbisL1-mrna-124, nbisL1-mrna-125, nbisL1-mrna-14126 ... nbisL1-mrna-14127, nbisL1-mrna-3066, nbisL1-mrna-9153, nbisL1-mrna-9154, nbisL1-mrna-9959
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000009l.327, add.evm.TU.utg000019l.27 ... evm.TU.utg000004l.205, evm.TU.utg000005l.79
Rhizophoraceae	Kandelia obovata	4	Maker00002046, Maker00003847, Maker00005191, Maker00009972
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-21491, nbisL1-mrna-21492, nbisL1-mrna-21543 ... nbisL1-mrna-21858, nbisL1-mrna-3735, nbisL1-mrna-533
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-19473, nbisL1-mrna-5888, nbisL1-mrna-7809
Salicaceae	Populus euphratica	8	populus_peu02333, populus_peu06324, populus_peu11730 ... populus_peu11731, populus_peu11736, populus_peu20157, populus_peu25794, populus_peu25795
Solanaceae	Lycium barbarum	3	gene-LOC132613877, gene-LOC132621098, gene-LOC132630101
Solanaceae	Solanum chilense	3	SOLCI000383800, SOLCI004331100, SOLCI006729000
Solanaceae	Solanum pennellii	3	gene-LOC107011607, gene-LOC107017621, gene-LOC107030688
Tamaricaceae	Reaumuria soongarica	3	MSTRG.1619_chr01_-, STRG.3455_chr02_-, STRG.4596_chr02_+
Tamaricaceae	Tamarix chinensis	3	TC10G0742, TC12G0363, TC12G1491
Zosteraceae	Zostera marina	1	Zosma04g18780.v3.1