Basic Information
Locus ID:
nbisL1-mrna-7790
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
disease resistance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 8238942 | 8254102 | + | nbisL1-mrna-7790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 235,406.16 Da | 43.83 | 103.35 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 164 | 398 | 4.6E-43 | IPR002182 |
| SUPERFAMILY | SSF52058 | L domain-like | 472 | 1005 | 4.59E-21 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 148 | 411 | 1.67E-43 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 1806 | 2056 | 1.39E-9 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1075 | 1493 | 1.02E-14 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 1639 | 1870 | 2.98E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1560 | 1777 | 1.7E-13 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1826 | 2058 | 4.5E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1032 | 1212 | 1.4E-13 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 508 | 1025 | 8.6E-32 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 312 | 400 | 1.7E-16 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1217 | 1437 | 1.7E-7 | IPR032675 |
| Gene3D | G3DSA:3.40.50.300 | - | 154 | 311 | 6.1E-28 | IPR027417 |
| PRINTS | PR00364 | Disease resistance protein signature | 253 | 267 | 3.0E-17 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 620 | 636 | 3.0E-17 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 180 | 195 | 3.0E-17 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 345 | 359 | 3.0E-17 | - |
| Coils | Coil | Coil | 438 | 458 | - | - |
| Coils | Coil | Coil | 72 | 99 | - | - |
| Coils | Coil | Coil | 36 | 56 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12220.1 | Disease resistance protein (CC-NBS-LRR class) family. Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB. | 0 |
| RefSeq | XP_043814376.1 | uncharacterized protein LOC122724058 isoform X2 [Manihot esculenta] | 0 |
| O64973 | Disease resistance protein RPS5 OS=Arabidopsis thaliana OX=3702 GN=RPS5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T2XBS2 | NB-ARC domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_023210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology