Basic Information
Locus ID:
nbisL1-mrna-7750
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002078F_pilon | 1532475 | 1538339 | - | nbisL1-mrna-7750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 84,393.80 Da | 49.73 | 79.06 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 172 | 477 | 4.8584E-162 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 173 | 476 | 1.1E-43 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 169 | 478 | 1.0E-83 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 168 | 479 | 1.5E-87 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 173 | 479 | 47.484856 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 174 | 189 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 762 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_024446035.2 | - | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2LAN6 | Uncharacterized protein MANES_16G133800 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology