Basic Information
Locus ID:
nbisL1-mrna-7718
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Transcription factor IIIB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 23839568 | 23852536 | - | nbisL1-mrna-7718 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 69,068.51 Da | 43.90 | 70.13 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00043 | CYCLIN | 96 | 144 | 7.10269E-6 | IPR013763 |
| CDD | cd00043 | CYCLIN | 173 | 258 | 0.00421807 | IPR013763 |
| Pfam | PF07741 | Brf1-like TBP-binding domain | 411 | 538 | 7.9E-25 | IPR011665 |
| Pfam | PF00382 | Transcription factor TFIIB repeat | 191 | 250 | 7.5E-10 | IPR013150 |
| Pfam | PF00382 | Transcription factor TFIIB repeat | 85 | 145 | 2.6E-11 | IPR013150 |
| SUPERFAMILY | SSF47954 | Cyclin-like | 172 | 259 | 4.86E-18 | IPR036915 |
| SUPERFAMILY | SSF47954 | Cyclin-like | 80 | 163 | 1.78E-19 | IPR036915 |
| Gene3D | G3DSA:1.10.472.10 | - | 62 | 165 | 2.3E-24 | - |
| Gene3D | G3DSA:1.20.5.650 | Single helix bin | 388 | 454 | 4.3E-13 | - |
| Gene3D | G3DSA:1.10.472.10 | - | 173 | 262 | 1.1E-19 | - |
| PRINTS | PR00685 | Transcription initiation factor IIB signature | 119 | 138 | 5.4E-8 | IPR000812 |
| PRINTS | PR00685 | Transcription initiation factor IIB signature | 16 | 36 | 5.4E-8 | IPR000812 |
| PRINTS | PR00685 | Transcription initiation factor IIB signature | 213 | 229 | 5.4E-8 | IPR000812 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 551 | 592 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 603 | 617 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 617 | - | - |
| Coils | Coil | Coil | 267 | 287 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09360.2 | - | 0 |
| RefSeq | XP_021667877.1 | transcription factor IIIB 60 kDa subunit isoform X3 [Hevea brasiliensis] | 0 |
| Q92994 | Transcription factor IIIB 90 kDa subunit OS=Homo sapiens OX=9606 GN=BRF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M7M7 | Transcription factor IIIB 60 kDa subunit OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31439 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16373, gene_18312 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah011115, Ah018626 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g050040 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14864, Sbi_jg55637 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26192 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017947 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl01106, Sgl06190, Sgl06191, Sgl30991, Sgl65695, Sgl70024 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003338, gene:ENSEOMG00000031888 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0007210 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30247010 |
| Apiaceae | Apium graveolens | 4 | Ag10G00424, Ag10G00483, Ag10G02947, Ag5G02708 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G012660 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708565 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.475.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G28406, Ftri16G12612 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G30455.1, AT2G01280.1, AT2G45100.1, AT3G09360.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10011362m.g.v1.0, Thhalv10020503m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g06510.v2.2, Sp3g07740.v2.2, Sp7g13230.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g002470.2N, BniB03g023310.2N, BniB03g023320.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G2260 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G2546 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g02320 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0164s00005.v1.0, Dusal.0164s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g08660 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1981 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00000322, Pov_00019811, Pov_00028859 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G38264, Lb1G02578 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2069, BH06.1908, CH06.2093 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0230040, gene-QOZ80_5AG0378150 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0236160.1, HORVU.MOREX.r3.5HG0483900.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_005155, gene-QYE76_005175, gene-QYE76_010725 ... |
| Poaceae | Oryza coarctata | 3 | Oco07G002330, Oco09G005590, Oco10G006360 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g23940.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G179300, gene-BS78_09G219500 |
| Poaceae | Puccinellia tenuiflora | 9 | Pt_Chr0106028, Pt_Chr0106072, Pt_Chr0200710, Pt_Chr0200711 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr26G003210, Chr30G013780 |
| Poaceae | Thinopyrum elongatum | 5 | Tel1E01G638500, Tel2E01G989400, Tel3E01G182700 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1AG057230, gene_TRIDC3AG012900 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G389400.1, TraesCS1D02G397500.1 ... |
| Poaceae | Zea mays | 10 | Zm00001eb028910_P001, Zm00001eb075750_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8148 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21027 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.3115, evm.TU.LG16.491 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g17880 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.457, evm.TU.Scaffold_2_RagTag.1794 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-3013, nbisL1-mrna-3153, nbisL1-mrna-7718 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16045, nbisL1-mrna-354 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13911 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.222 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006148, Maker00011478 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12814, nbisL1-mrna-8514 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16388, nbisL1-mrna-606 |
| Salicaceae | Populus euphratica | 3 | populus_peu02072, populus_peu16145, populus_peu35734 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132625969, gene-LOC132625977, gene-LOC132645833 |
| Solanaceae | Solanum chilense | 1 | SOLCI001872800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007248, gene-LOC107020170 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.21486_chr08_-, gene_10741, gene_12295 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0392 |
| Zosteraceae | Zostera marina | 2 | Zosma05g10680.v3.1, Zosma05g10700.v3.1 |