Basic Information
Locus ID:
nbisL1-mrna-7716
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 46150698 | 46156116 | - | nbisL1-mrna-7716 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.39 | 64,826.22 Da | 40.40 | 94.67 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 144 | 192 | 2.9E-9 | IPR019787 |
| Pfam | PF05922 | Peptidase inhibitor I9 | 254 | 298 | 1.6E-7 | IPR010259 |
| Pfam | PF01426 | BAH domain | 66 | 143 | 4.0E-16 | IPR001025 |
| SUPERFAMILY | SSF52743 | Subtilisin-like | 308 | 461 | 6.15E-19 | IPR036852 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 143 | 195 | 1.84E-17 | IPR011011 |
| Gene3D | G3DSA:3.40.50.200 | Peptidase S8/S53 domain | 376 | 441 | 4.9E-15 | IPR036852 |
| Gene3D | G3DSA:2.30.30.490 | - | 58 | 143 | 1.6E-24 | IPR043151 |
| Gene3D | G3DSA:3.30.70.80 | Peptidase S8 propeptide/proteinase inhibitor I9 | 237 | 304 | 7.8E-5 | IPR037045 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 198 | 6.8E-17 | IPR013083 |
| SMART | SM00439 | BAH_4 | 65 | 168 | 1.9E-20 | IPR001025 |
| SMART | SM00249 | PHD_3 | 144 | 191 | 1.3E-9 | IPR001965 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 65 | 178 | 14.890762 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 142 | 193 | 9.125099 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 145 | 190 | - | IPR019786 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_039070420.1 | subtilisin-like protease SBT2.4 [Hibiscus syriacus] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3I2X3 | PHD-type domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_15358 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology