Basic Information
Locus ID:
nbisL1-mrna-77
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001172F_pilon | 437412 | 446703 | - | nbisL1-mrna-77 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.85 | 104,992.21 Da | 37.95 | 83.46 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 336 | 612 | 4.88E-31 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 716 | 921 | 3.16E-13 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 310 | 466 | 4.0E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 694 | 943 | 3.5E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 467 | 643 | 1.7E-12 | IPR015943 |
| SMART | SM00668 | ctlh | 34 | 92 | 4.6E-13 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 1.1E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 529 | 570 | 0.15 | IPR001680 |
| SMART | SM00320 | WD40_4 | 427 | 468 | 6.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 875 | 912 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 815 | 857 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 334 | 373 | 0.003 | IPR001680 |
| SMART | SM00320 | WD40_4 | 483 | 526 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 382 | 422 | 19.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 545 | 579 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 340 | 382 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.019655 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.212442 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 340 | 374 | 8.676514 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 928 | 951 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 912 | 951 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021622866.1 | topless-related protein 3 [Manihot esculenta] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MSI8 | Topless-related protein 3 isoform X1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology