Basic Information
Locus ID:
nbisL1-mrna-7698
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Zinc finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 7287928 | 7289382 | - | nbisL1-mrna-7698 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 12,010.51 Da | 74.61 | 47.88 | -1.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12171 | Zinc-finger double-stranded RNA-binding | 43 | 69 | 3.9E-9 | IPR022755 |
| SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 32 | 95 | 4.0E-18 | IPR036236 |
| Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 31 | 94 | 7.2E-24 | - |
| SMART | SM00451 | ZnF_U1_5 | 41 | 75 | 1.7E-9 | IPR003604 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 46 | 68 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36930.1 | zinc finger (C2H2 type) family protein. | 0 |
| RefSeq | XP_021682361.1 | zinc finger protein 593 [Hevea brasiliensis] | 0 |
| B0BLT0 | Zinc finger protein 593 OS=Xenopus tropicalis OX=8364 GN=znf593 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2L5F4 | Uncharacterized protein MANES_09G065800 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3496 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14322 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah025148, Ah030515, Ah033588 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g161520 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27153, Sbi_jg33399 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8076 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005746 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71264, Sgl74836 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006900, gene:ENSEOMG00000036127 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0016230, CQ.Regalona.r1.7BG0020550 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30273300 |
| Arecaceae | Cocos nucifera | 2 | COCNU_09G008770, scaffold029251G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706999, gene-LOC103714887 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G19398 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G36930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017435m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g19220.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g007500.2N, BniB08g023340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1364 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1394 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g05230 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0277s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g13660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8591 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1503 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015574 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37206, Lb2G09919 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2423, BH08.2593, CH08.2767 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0641340, gene-QOZ80_8BG0669780 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0336310.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030855 |
| Poaceae | Oryza coarctata | 2 | Oco15G014940, Oco16G014200 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g45040.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G231800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0306715, Pt_Chr0403338 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr16G019260, Chr17G018170, Chr20G000180, Chr29G000080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G075800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG042450, gene_TRIDC4BG006540 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G272700.1, TraesCS4B02G041400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb038700_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17691, nbis-gene-42901 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24556 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2697, evm.TU.LG14.1831 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g13410, gene.Posoc02g13430 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1527 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5230 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20996 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3932 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.526 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016584 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7698 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-368 |
| Salicaceae | Populus euphratica | 2 | populus_peu25740, populus_peu25810 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630006 |
| Solanaceae | Solanum chilense | 1 | SOLCI004160000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029135 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.27321_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1923 |