Basic Information
Locus ID:
nbisL1-mrna-7685
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 7175783 | 7178526 | + | nbisL1-mrna-7685 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 41,998.03 Da | 62.21 | 74.58 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 108 | 189 | 2.9E-17 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 291 | 349 | 1.4E-26 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 243 | 286 | 1.0E-6 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 243 | 293 | 2.38E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 105 | 179 | 7.85E-16 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 180 | 237 | 6.02E-19 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 315 | 359 | 1.9E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 237 | 306 | 1.2E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 244 | 286 | 7.0E-7 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 101 | 177 | 25.062738 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 244 | 287 | 11.972923 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 179 | 243 | 33.783707 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021686331.1 | E3 ubiquitin-protein ligase RZFP34-like [Hevea brasiliensis] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M6H4 | RING finger and CHY zinc finger domain-containing protein 1 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology