Basic Information
Locus ID:
nbisL1-mrna-768
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6225850 | 6227517 | + | nbisL1-mrna-768 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 35,623.85 Da | 46.49 | 73.05 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 54 | 328 | 8.4E-86 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 217 | 320 | 6.87E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 214 | 330 | 2.2E-43 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 219 | 321 | 26.492605 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_039052642.1 | auxin-responsive protein IAA27-like [Hibiscus syriacus] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2WRH2 | Auxin-responsive protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00116997pilonHSYRG00730 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology