Basic Information
Locus ID:
nbisL1-mrna-7676
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 7078943 | 7086183 | - | nbisL1-mrna-7676 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 107,760.38 Da | 45.52 | 81.48 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 605 | 645 | 8.64027E-18 | - |
| Pfam | PF16135 | Tify domain binding domain | 539 | 589 | 5.0E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 242 | 297 | 4.2E-13 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 688 | 750 | 1.17E-8 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 593 | 647 | 5.76E-15 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 689 | 752 | 6.4E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 592 | 687 | 1.8E-16 | IPR013083 |
| SMART | SM00249 | PHD_3 | 605 | 646 | 3.7E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 693 | 750 | 0.004 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 603 | 648 | 10.2376 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 606 | 645 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 475 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 414 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_012082509.1 | uncharacterized protein LOC105642316 [Jatropha curcas] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MRG7 | PHD-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology