Basic Information
Locus ID:
nbisL1-mrna-765
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 7879065 | 7884988 | - | nbisL1-mrna-765 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.78 | 32,171.87 Da | 44.10 | 70.18 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 106 | 242 | 2.11623E-50 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 110 | 241 | 1.5E-38 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 103 | 248 | 3.17E-45 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 93 | 261 | 9.2E-49 | IPR016135 |
| SMART | SM00212 | ubc_7 | 103 | 247 | 1.2E-49 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 102 | 247 | 40.676868 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 172 | 188 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 283 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.1 | ubiquitin-conjugating enzyme 5. | 0 |
| RefSeq | XP_021674493.1 | ubiquitin-conjugating enzyme E2-23 kDa-like [Hevea brasiliensis] | 0 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2JQB9 | UBC core domain-containing protein OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology