Basic Information
Locus ID:
nbisL1-mrna-7648
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000106F_pilon | 5473715 | 5483722 | + | nbisL1-mrna-7648 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 164,491.86 Da | 43.96 | 72.02 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 1029 | 1279 | 9.24363E-109 | - |
| CDD | cd06410 | PB1_UP2 | 188 | 285 | 2.59696E-41 | - |
| Pfam | PF00564 | PB1 domain | 202 | 285 | 3.7E-15 | IPR000270 |
| Pfam | PF02365 | No apical meristem (NAM) protein | 1320 | 1438 | 1.1E-11 | IPR003441 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 1025 | 1279 | 2.9E-62 | IPR001245 |
| SUPERFAMILY | SSF101941 | NAC domain | 1316 | 1438 | 2.22E-14 | IPR036093 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1014 | 1278 | 9.84E-78 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 200 | 288 | 5.89E-18 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1010 | 1102 | 2.7E-25 | - |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 1328 | 1446 | 2.4E-10 | IPR036093 |
| Gene3D | G3DSA:3.10.20.90 | - | 203 | 288 | 2.2E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1103 | 1320 | 2.9E-53 | - |
| SMART | SM00220 | serkin_6 | 1023 | 1282 | 1.3E-56 | IPR000719 |
| SMART | SM00666 | PB1_new | 199 | 286 | 5.3E-22 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1023 | 1281 | 40.767414 | IPR000719 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 1319 | 1472 | 22.171114 | IPR003441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1029 | 1050 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1141 | 1153 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1135 | 1153 | 1.3E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1206 | 1228 | 1.3E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1098 | 1111 | 1.3E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1250 | 1272 | 1.3E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 578 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79570.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_021639805.1 | uncharacterized protein LOC110634958 [Hevea brasiliensis] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JWA4 | Protein kinase domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology