Basic Information
Locus ID:
nbisL1-mrna-7604
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
UBP15
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000106F_pilon | 5048437 | 5049788 | + | nbisL1-mrna-7604 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 30,758.87 Da | 48.59 | 83.70 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 78 | 115 | 2.7E-10 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 74 | 120 | 1.19E-12 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 68 | 121 | 2.6E-13 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 78 | 115 | 11.706373 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 78 | 115 | - | IPR002893 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17110.1 | ubiquitin-specific protease 15. Encodes a ubiquitin-specific protease, and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation, and the associated processes of leaf, root, stem, flower, and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues, UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant. | 0 |
| RefSeq | XP_024437240.2 | ubiquitin carboxyl-terminal hydrolase 15 isoform X2 [Populus trichocarpa] | 0 |
| Q9FPS9 | Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana OX=3702 GN=UBP15 PE=1 SV=2 | 0 | |
| TrEMBL | A0A835MX07 | Ubiquitin carboxyl-terminal hydrolase 15 OS=Salix dunnii OX=1413687 GN=SADUNF_Sadunf11G0067100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology