Basic Information
Locus ID:
nbisL1-mrna-759
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001172F_pilon | 4809139 | 4812199 | - | nbisL1-mrna-759 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 37,380.99 Da | 43.59 | 66.58 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 64 | 102 | 1.04539E-13 | - |
| CDD | cd03829 | Sina | 180 | 308 | 1.6646E-64 | - |
| Pfam | PF03145 | Seven in absentia protein family | 108 | 307 | 6.0E-80 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 58 | 106 | 7.66E-5 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 119 | 311 | 4.58E-52 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 173 | 307 | 1.9E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 118 | 1.9E-5 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 172 | 4.7E-18 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 66 | 102 | 9.169853 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 119 | 179 | 14.612141 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27880.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_021289145.1 | E3 ubiquitin-protein ligase SINAT5-like [Herrania umbratica] | 0 |
| Q9STN8 | E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana OX=3702 GN=SINAT4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J1AQI4 | RING-type E3 ubiquitin transferase OS=Herrania umbratica OX=108875 GN=LOC110420203 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology