Basic Information
Locus ID:
nbisL1-mrna-7566
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 43704954 | 43709043 | - | nbisL1-mrna-7566 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.28 | 71,993.99 Da | 46.37 | 96.98 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 323 | 591 | 8.8E-43 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 148 | 208 | 2.8E-11 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 82 | 121 | 8.8E-8 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 83 | 218 | 6.8E-32 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 305 | 599 | 6.52E-74 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 80 | 241 | 9.5E-45 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 293 | 396 | 3.0E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 397 | 609 | 1.8E-61 | - |
| SMART | SM00369 | LRR_typ_2 | 195 | 218 | 46.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 321 | 593 | 1.9E-28 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 147 | 170 | 10.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 171 | 194 | 72.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 321 | 597 | 35.212753 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 327 | 349 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 443 | 455 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45780.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_039070702.1 | probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Hibiscus syriacus] | 0 |
| C0LGU5 | Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana OX=3702 GN=At5g45780 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3I0N9 | Protein kinase domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_15844 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology