Basic Information
Locus ID:
nbisL1-mrna-7559
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 6049438 | 6052895 | - | nbisL1-mrna-7559 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 42,596.96 Da | 36.68 | 84.74 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 220 | 364 | 1.25646E-60 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 159 | 363 | 2.2E-33 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 191 | 365 | 2.75E-50 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 175 | 367 | 1.3E-54 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 40 | 366 | 30.418512 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 309 | 326 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_021652406.1 | ubiquitin carboxyl-terminal hydrolase 8-like isoform X2 [Hevea brasiliensis] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2M450 | Ubiquitin carboxyl-terminal hydrolase 8-like OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology