Basic Information
Locus ID:
nbisL1-mrna-7542
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 5912314 | 5924244 | + | nbisL1-mrna-7542 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 131,174.98 Da | 43.90 | 78.99 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 53 | 177 | 1.96395E-40 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 195 | 523 | 9.18046E-168 | - |
| Pfam | PF00917 | MATH domain | 59 | 177 | 1.4E-20 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 622 | 874 | 4.1E-77 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 197 | 518 | 1.6E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 884 | 1095 | 2.5E-57 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 192 | 549 | 8.05E-98 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 50 | 186 | 2.94E-42 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 800 | 897 | 4.3E-28 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 51 | 193 | 3.2E-52 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 682 | 799 | 4.6E-45 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 194 | 522 | 2.3E-89 | - |
| SMART | SM00061 | math_3 | 54 | 158 | 5.1E-21 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 197 | 521 | 40.203407 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 52 | 177 | 39.031105 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 198 | 213 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 437 | 454 | - | IPR018200 |
| Coils | Coil | Coil | 534 | 557 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.2 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_012090874.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2MFL2 | ubiquitinyl hydrolase 1 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology