Basic Information
Locus ID:
nbisL1-mrna-7533
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
CUGBP Elav-like family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001820F_pilon | 4650780 | 4654852 | + | nbisL1-mrna-7533 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 47,002.87 Da | 45.29 | 67.58 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12361 | RRM1_2_CELF1-6_like | 95 | 170 | 8.87985E-36 | - |
| CDD | cd12362 | RRM3_CELF1-6 | 350 | 422 | 5.55462E-41 | - |
| CDD | cd12361 | RRM1_2_CELF1-6_like | 7 | 83 | 1.7697E-37 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 350 | 420 | 1.4E-15 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 72 | 5.4E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 96 | 157 | 2.8E-16 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 88 | 2.42E-18 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 94 | 428 | 2.72E-42 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 316 | 425 | 4.5E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 90 | 5.1E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 91 | 183 | 1.8E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 7 | 83 | 1.7E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 349 | 422 | 1.3E-21 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 95 | 170 | 4.1E-18 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 87 | 13.498382 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 94 | 174 | 16.295467 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 348 | 426 | 16.807129 | IPR000504 |
| PRINTS | PR00961 | Paraneoplastic encephalomyelitis antigen family signature | 114 | 126 | 9.7E-8 | IPR002343 |
| PRINTS | PR00961 | Paraneoplastic encephalomyelitis antigen family signature | 6 | 21 | 9.7E-8 | IPR002343 |
| PRINTS | PR00961 | Paraneoplastic encephalomyelitis antigen family signature | 99 | 114 | 9.7E-8 | IPR002343 |
| PRINTS | PR00961 | Paraneoplastic encephalomyelitis antigen family signature | 155 | 172 | 9.7E-8 | IPR002343 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 199 | - | - |
| Coils | Coil | Coil | 176 | 196 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03110.1 | RNA-binding protein-defense related 1. Encodes a putative RNA-binding protein that is located in the cytoplasm and is involved in the hypersensitive response and positively regulates salicylic acid-mediated immunity. | 0 |
| RefSeq | XP_002520700.1 | RNA-binding protein BRN1 isoform X1 [Ricinus communis] | 0 |
| Q8LFS6 | RNA-binding protein BRN1 OS=Arabidopsis thaliana OX=3702 GN=BRN1 PE=2 SV=1 | 0 | |
| TrEMBL | B9S3Y1 | RNA binding protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0556860 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16095, jg35244, jg37911, jg8847 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5143 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah029689, Ah032912 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg35852, Sbi_jg914 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3844 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013667 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71883, Sgl75445 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007103, gene:ENSEOMG00000034662 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0014650, CQ.Regalona.r1.7BG0016620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30010120 |
| Apiaceae | Apium graveolens | 3 | Ag11G03088, Ag2G02439, Ag6G02257 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G008770, COCNU_16G002830 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711713, gene-LOC103722798 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1378.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G33737, Ftri15G26567 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G03457.2, AT4G03110.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10007707m.g.v1.0, Thhalv10028663m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02420.v2.2, Sp6g03140.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g055600.2N, BniB06g047370.2N, BniB08g045830.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1628 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1689 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g05220, gene.Cymno14g10470 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0160s00017.v1.0, Dusal.0945s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g02070 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-6282, nbisL1-mrna-6283, nbisL1-mrna-9648 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.258 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008195, Pov_00024818 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G23685, Lb4G23891, Lb5G29048 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.4463, AH05.2693, BH02.4512, BH02.4513, BH05.2788 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0046060, gene-QOZ80_1BG0096030 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0059810.1, HORVU.MOREX.r3.3HG0316870.1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_013784, gene-QYE76_017622, gene-QYE76_057815 ... |
| Poaceae | Oryza coarctata | 5 | Oco01G029560, Oco02G030740, Oco09G008040, Oco10G008260 ... |
| Poaceae | Oryza sativa | 5 | LOC_Os01g71200.1, LOC_Os05g30980.1, LOC_Os05g34560.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G398600, gene-BS78_09G123300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505285, Pt_Chr0600757 |
| Poaceae | Sporobolus alterniflorus | 10 | Chr01G021720, Chr02G001380, Chr03G023470, Chr05G033170 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G394000, Tel3E01G760400, Tel3E01G760500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG035570, gene_TRIDC1BG040770 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G236000.2, TraesCS1B02G247800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb285190_P001, Zm00001eb346250_P002 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-10869, nbis-gene-28198, nbis-gene-38799 ... |
| Poaceae | Zoysia macrostachya | 4 | Zma_g11910, Zma_g26740, Zma_g28109, Zma_g9351 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.178, evm.TU.LG03.769, evm.TU.LG04.574 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g20500 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.918, evm.TU.Scaffold_9_RagTag.863 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11426, nbisL1-mrna-21357 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19933, nbisL1-mrna-7731 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11537, nbisL1-mrna-18441 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.552, evm.TU.utg000006l.257 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009637, Maker00013057 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10038, nbisL1-mrna-1536 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5190, nbisL1-mrna-7533 |
| Salicaceae | Populus euphratica | 3 | populus_peu19066, populus_peu27195, populus_peu37453 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608316, gene-LOC132609310 |
| Solanaceae | Solanum chilense | 1 | SOLCI007330800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031400 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10702 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0630 |
| Zosteraceae | Zostera marina | 1 | Zosma01g27260.v3.1 |