Basic Information
Locus ID:
nbisL1-mrna-7523
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
spa1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000106F_pilon | 4573958 | 4581009 | - | nbisL1-mrna-7523 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 89,739.07 Da | 59.18 | 83.40 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 664 | 699 | 0.012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 501 | 800 | 7.89E-44 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 45 | 339 | 2.62E-20 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 476 | 804 | 5.3E-108 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 78 | 346 | 3.7E-25 | - |
| SMART | SM00320 | WD40_4 | 618 | 657 | 0.71 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 530 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 758 | 802 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 708 | 747 | 13.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 16 | 334 | 7.2E-5 | IPR000719 |
| SMART | SM00320 | WD40_4 | 583 | 617 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 541 | 580 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 661 | 699 | 3.6E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 668 | 701 | 11.744925 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 668 | 701 | 9.810144 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 334 | 12.965838 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 686 | 700 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 31 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.1 | SPA1-related 3. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA3 (and SPA4) predominantly regulates elongation growth in adult plants. | 0 |
| RefSeq | XP_002533551.2 | protein SPA1-RELATED 3 isoform X2 [Ricinus communis] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MKL9 | Protein SPA1-RELATED 3 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology