Basic Information
Locus ID:
nbisL1-mrna-7504
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001820F_pilon | 4475207 | 4479209 | - | nbisL1-mrna-7504 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 48,289.11 Da | 58.43 | 79.89 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 311 | 336 | 0.0076 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 85 | 345 | 8.99E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 97 | 424 | 5.9E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 253 | 293 | 0.063 | IPR001680 |
| SMART | SM00320 | WD40_4 | 296 | 337 | 0.042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 171 | 206 | 440.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 44 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_021647869.1 | autophagy-related protein 18a-like [Hevea brasiliensis] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LL31 | Autophagy-related protein 18a-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology