halophFGD

Basic Information

Locus ID: nbisL1-mrna-7501

Species & Taxonomic ID: Hibiscus hamabo Siebold & Zucc. & 1841

Genome Assembly:

Description: DNA repair protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	42705541	42706208	+	nbisL1-mrna-7501

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.25	6,806.75 Da	28.73	91.54	-0.18

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00240	Ubiquitin family	3	53	5.4E-9	IPR000626
SUPERFAMILY	SSF54236	Ubiquitin-like	2	59	5.07E-12	IPR029071
Gene3D	G3DSA:3.10.20.90	-	1	57	1.2E-14	-
ProSiteProfiles	PS50053	Ubiquitin domain profile.	1	56	10.571166	IPR000626

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10839 (UV excision repair protein RAD23)

Pathway:

ko03420 (Nucleotide excision repair) map03420 (Nucleotide excision repair) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G16190.2	-
RefSeq	XP_022715400.1	ubiquitin receptor RAD23b-like isoform X3 [Durio zibethinus]
Swiss-Prot	Q84L32	Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=2 SV=2
TrEMBL	A0A067E4G5	Ubiquitin receptor RAD23 OS=Citrus sinensis OX=2711 GN=CISIN_1g0198171mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg18362, jg27118, jg34928, jg5278, jg7238
Aizoaceae	Mesembryanthemum crystallinum	3	gene_11211, gene_16602, gene_4001
Amaranthaceae	Atriplex hortensis	5	Ah003099, Ah020036, Ah025489, Ah025848, Ah035469
Amaranthaceae	Beta vulgaris	2	BVRB_2g026730, BVRB_6g142060
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg13820, Sbi_jg21888, Sbi_jg29536, Sbi_jg38161 ... Sbi_jg52099, Sbi_jg6282
Amaranthaceae	Salicornia europaea	3	Seu_jg15568, Seu_jg15861, Seu_jg9742
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003614, GOSA_00008487, GOSA_00018864
Amaranthaceae	Suaeda glauca	7	Sgl01566, Sgl06737, Sgl12782, Sgl39802, Sgl63153, Sgl63288 ... Sgl67767
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000000358, gene:ENSEOMG00000002653 ... gene:ENSEOMG00000015663, gene:ENSEOMG00000017688, gene:ENSEOMG00000018162, gene:ENSEOMG00000024105, gene:ENSEOMG00000032384, gene:ENSEOMG00000045532, gene:ENSEOMG00000051709
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2AG0019400, CQ.Regalona.r1.2BG0021140 ... CQ.Regalona.r1.3AG0013180, CQ.Regalona.r1.3BG0013150, CQ.Regalona.r1.6BG0015490, CQ.Regalona.r1.6BG0015510
Anacardiaceae	Pistacia vera	3	pistato.v30130740, pistato.v30191580, pistato.v30225470
Apiaceae	Apium graveolens	6	Ag4G00059, Ag4G00520, Ag5G02033, Ag8G02054, Ag9G01270 ... AgUnG00148
Arecaceae	Cocos nucifera	3	COCNU_02G005180, COCNU_03G010170, COCNU_11G012340
Arecaceae	Phoenix dactylifera	4	gene-LOC103695556, gene-LOC103701057, gene-LOC103710457 ... gene-LOC103715340
Asparagaceae	Asparagus officinalis	6	AsparagusV1_01.27.V1.1, AsparagusV1_05.2574.V1.1 ... AsparagusV1_05.3432.V1.1, AsparagusV1_06.494.V1.1, AsparagusV1_07.3580.V1.1, AsparagusV1_Unassigned.916.V1.1
Asteraceae	Flaveria trinervia	5	Ftri11G16779, Ftri13G17454, Ftri18G15652, Ftri18G15771 ... Ftri1G10187
Brassicaceae	Arabidopsis thaliana	5	AT1G16190.1, AT1G79650.4, AT3G02540.1, AT5G16090.1 ... AT5G38470.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10007982m.g.v1.0, Thhalv10016009m.g.v1.0 ... Thhalv10018655m.g.v1.0, Thhalv10020817m.g.v1.0, Thhalv10027790m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g14430.v2.2, Sp3g01570.v2.2, Sp5g34720.v2.2 ... Sp7g03580.v2.2
Brassicaceae	Brassica nigra	7	BniB01g029150.2N, BniB02g046670.2N, BniB03g026820.2N ... BniB06g041540.2N, BniB06g051030.2N, BniB06g060440.2N, BniB07g061270.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq03G2061, Ceq05G0646, Ceq08G0755
Casuarinaceae	Casuarina glauca	4	Cgl03G2177, Cgl03G2200, Cgl05G0660, Cgl08G0752
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g07310, gene.Cymno11g08440
Dunaliellaceae	Dunaliella salina	1	Dusal.0083s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g10510, gene.Thate05g24310
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-11621, nbisL1-mrna-3366, nbisL1-mrna-4657 ... nbisL1-mrna-7501, nbisL1-mrna-7505
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.705, evm.TU.LG02.445, evm.TU.LG03.537
Plantaginaceae	Plantago ovata	5	Pov_00001129, Pov_00013955, Pov_00020088, Pov_00028293 ... Pov_00033190
Plumbaginaceae	Limonium bicolor	2	Lb0G37512, Lb1G01914
Poaceae	Echinochloa crus-galli	12	AH03.1867, AH06.1088, AH07.576, AH08.1616, BH03.2048 ... BH06.1121, BH07.703, BH08.1665, CH03.2219, CH06.1232, CH07.583, CH08.1811
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0103690, gene-QOZ80_2BG0157010 ... gene-QOZ80_6AG0516470, gene-QOZ80_6AG0534750, gene-QOZ80_6BG0468090, gene-QOZ80_6BG0487930
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.5HG0479410.1, HORVU.MOREX.r3.6HG0569490.1 ... HORVU.MOREX.r3.6HG0569510.1, HORVU.MOREX.r3.7HG0670490.1
Poaceae	Lolium multiflorum	4	gene-QYE76_005008, gene-QYE76_021029, gene-QYE76_029299 ... gene-QYE76_031461
Poaceae	Oryza coarctata	7	Oco03G004010, Oco04G003960, Oco11G006910, Oco12G007050 ... Oco15G008820, Oco16G008300, Oco18G004490
Poaceae	Oryza sativa	5	LOC_Os02g08300.1, LOC_Os06g15360.1, LOC_Os08g21630.1 ... LOC_Os08g33340.1, LOC_Os09g24200.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G178700, gene-BS78_04G059500 ... gene-BS78_10G108500
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0106552, Pt_Chr0202331, Pt_Chr0403619, Pt_Chr0404491 ... Pt_Chr0702261
Poaceae	Sporobolus alterniflorus	10	Chr10G010390, Chr11G018260, Chr14G005250, Chr14G013570 ... Chr15G025270, Chr17G013720, Chr20G005720, Chr21G004710, Chr21G012740, Chr29G005530
Poaceae	Thinopyrum elongatum	6	Tel3E01G607300, Tel5E01G339900, Tel6E01G308900 ... Tel7E01G097600, Tel7E01G098200, Tel7E01G376700
Poaceae	Triticum dicoccoides	6	gene_TRIDC5AG032940, gene_TRIDC5BG034970 ... gene_TRIDC6AG020610, gene_TRIDC6BG026520, gene_TRIDC7AG026000, gene_TRIDC7BG016580
Poaceae	Triticum aestivum	9	TraesCS5A02G204200.1, TraesCS5B02G204000.1 ... TraesCS5D02G211900.1, TraesCS6A02G149500.1, TraesCS6B02G177400.1, TraesCS6D02G138800.2, TraesCS7A02G206300.1, TraesCS7B02G113500.1, TraesCS7D02G209100.1
Poaceae	Zea mays	5	Zm00001eb099280_P001, Zm00001eb206650_P005 ... Zm00001eb280580_P001, Zm00001eb312260_P002, Zm00001eb379990_P002
Poaceae	Zoysia japonica	6	nbis-gene-16976, nbis-gene-20000, nbis-gene-30880 ... nbis-gene-44185, nbis-gene-45531, nbis-gene-50347
Poaceae	Zoysia macrostachya	6	Zma_g15058, Zma_g24090, Zma_g29469, Zma_g30289, Zma_g31714 ... Zma_g32440
Portulacaceae	Portulaca oleracea	8	evm.TU.LG04.2613, evm.TU.LG05.812, evm.TU.LG06.873 ... evm.TU.LG08.193, evm.TU.LG11.194, evm.TU.LG13.657, evm.TU.LG21.344, evm.TU.LG25.514
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g13630, gene.Posoc08g00620
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.140, evm.TU.Scaffold_15_RagTag.86 ... evm.TU.Scaffold_17_RagTag.917, evm.TU.Scaffold_6_RagTag.488
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-15398, nbisL1-mrna-23643, nbisL1-mrna-7232
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-2363, nbisL1-mrna-2972, nbisL1-mrna-7259
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-12213, nbisL1-mrna-14445, nbisL1-mrna-17429 ... nbisL1-mrna-21945
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000001l.49, evm.TU.utg000005l.305 ... evm.TU.utg000011l.267, evm.TU.utg000013l.512
Rhizophoraceae	Kandelia obovata	4	Maker00004353, Maker00004558, Maker00007822, Maker00010063
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10904, nbisL1-mrna-11673, nbisL1-mrna-22307 ... nbisL1-mrna-287
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21992, nbisL1-mrna-23141, nbisL1-mrna-2842
Salicaceae	Populus euphratica	5	populus_peu04151, populus_peu07056, populus_peu09531 ... populus_peu25002, populus_peu34977
Solanaceae	Lycium barbarum	4	gene-LOC132612614, gene-LOC132621063, gene-LOC132621665 ... gene-LOC132633105
Solanaceae	Solanum chilense	4	SOLCI002172800, SOLCI002423500, SOLCI002788500 ... SOLCI004288900
Solanaceae	Solanum pennellii	4	gene-LOC107011483, gene-LOC107012025, gene-LOC107015500 ... gene-LOC107017999
Tamaricaceae	Reaumuria soongarica	3	STRG.16771_chr08_+, gene_15901, gene_9857
Tamaricaceae	Tamarix chinensis	4	TC01G2166, TC05G1233, TC08G0652, TC09G1674
Zosteraceae	Zostera marina	2	Zosma01g09920.v3.1, Zosma05g17390.v3.1