Basic Information
Locus ID:
nbisL1-mrna-7497
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
strubbelig-receptor family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 42647714 | 42652569 | - | nbisL1-mrna-7497 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 76,873.07 Da | 44.47 | 87.41 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 396 | 667 | 1.09317E-85 | - |
| Pfam | PF00560 | Leucine Rich Repeat | 99 | 115 | 1.5 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 72 | 2.8E-8 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 392 | 664 | 1.6E-41 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 121 | 180 | 7.9E-9 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 35 | 210 | 5.1E-37 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 373 | 664 | 1.6E-68 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 354 | 467 | 4.1E-26 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 227 | 4.2E-41 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 469 | 691 | 4.4E-53 | - |
| SMART | SM00369 | LRR_typ_2 | 167 | 189 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 143 | 166 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 97 | 121 | 3.1 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 99 | 121 | 7.072797 | IPR001611 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 169 | 191 | 7.057395 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 390 | 667 | 34.817001 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 396 | 419 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 706 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_039058293.1 | protein STRUBBELIG-RECEPTOR FAMILY 6-like [Hibiscus syriacus] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2UKT8 | Protein kinase domain-containing protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D06G175400v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology