Basic Information
Locus ID:
nbisL1-mrna-7496
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Short Name:
UBC34
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 42638513 | 42642710 | + | nbisL1-mrna-7496 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 27,043.01 Da | 48.67 | 70.84 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 157 | 3.29442E-48 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 9 | 134 | 3.2E-20 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 144 | 3.28E-42 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 176 | 8.3E-59 | IPR016135 |
| SMART | SM00212 | ubc_7 | 8 | 162 | 1.3E-36 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 5 | 162 | 47.531445 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 189 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17280.1 | ubiquitin-conjugating enzyme 34. | 0 |
| RefSeq | XP_017646178.1 | PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Gossypium arboreum] | 0 |
| Q9SHI7 | Ubiquitin-conjugating enzyme E2 34 OS=Arabidopsis thaliana OX=3702 GN=UBC34 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0B0NSN3 | Ubiquitin-conjugating enzyme E2 34-like protein OS=Gossypium arboreum OX=29729 GN=LOC108486569 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25142 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5566 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028688 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g169090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1957, Sbi_jg34554 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2812 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011633 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73372, Sgl76895 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009189, gene:ENSEOMG00000035000 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0007030, CQ.Regalona.r1.9BG0007200 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30120480 |
| Apiaceae | Apium graveolens | 1 | Ag6G01352 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G005280, COCNU_08G003160 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716943 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.319.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G08465 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G17280.1, AT5G50430.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10009625m.g.v1.0, Thhalv10014520m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g15410.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g007030.2N, BniB03g027410.2N, BniB04g031700.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1097 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1137 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g00220, gene.Cymno14g03880 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0615s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g00350 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7496 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.238 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028853 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30575 |
| Poaceae | Echinochloa crus-galli | 4 | AH04.1393, AH06.617, BH06.682, CH06.697 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0512050, gene-QOZ80_6BG0463960 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0660830.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_027526 |
| Poaceae | Oryza coarctata | 2 | Oco11G004320, Oco12G004300 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g09330.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G072300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0405171, Pt_Chr0502911 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G021070, Chr14G003100, Chr21G002350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G315300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG019300, gene_TRIDC7BG008970 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G157200.1, TraesCS7B02G061500.1 ... |
| Poaceae | Zea mays | 10 | Zm00001eb028890_P001, Zm00001eb171360_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34941, nbis-gene-4958 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29262, Zma_g31507 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG12.1643, evm.TU.LG19.159 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g00520 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1452 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6722 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16130, nbisL1-mrna-21086 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22665 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.5 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004194 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4114 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8309 |
| Salicaceae | Populus euphratica | 3 | populus_peu02949, populus_peu02961, populus_peu33846 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132633560, gene-LOC132645203 |
| Solanaceae | Solanum chilense | 2 | SOLCI002801300, SOLCI004799300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107015160, gene-LOC107021226 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30798_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0534 |
| Zosteraceae | Zostera marina | 1 | Zosma01g38060.v3.1 |