Basic Information
Locus ID:
nbisL1-mrna-7482
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 42176106 | 42179918 | - | nbisL1-mrna-7482 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 45,028.04 Da | 46.67 | 95.41 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 25 | 223 | 3.88999E-131 | - |
| CDD | cd18787 | SF2_C_DEAD | 234 | 364 | 4.67751E-53 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 247 | 355 | 5.8E-25 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 47 | 207 | 2.0E-41 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 90 | 375 | 2.75E-71 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 11 | 229 | 2.3E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 230 | 394 | 4.8E-54 | IPR027417 |
| SMART | SM00490 | helicmild6 | 274 | 355 | 6.7E-25 | IPR001650 |
| SMART | SM00487 | ultradead3 | 40 | 237 | 2.3E-57 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 21 | 49 | 9.913343 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 52 | 222 | 29.717091 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 233 | 394 | 23.828823 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 168 | 176 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.3 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_040949696.1 | eukaryotic initiation factor 4A-10 [Gossypium hirsutum] | 0 |
| Q40465 | Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J9K1T1 | Eukaryotic initiation factor 4A-11 OS=Gossypium armourianum OX=34283 GN=Goarm_002994 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology