Basic Information
Locus ID:
nbisL1-mrna-7448
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 41219598 | 41224852 | + | nbisL1-mrna-7448 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 29,368.11 Da | 51.16 | 97.80 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 67 | 115 | 2.17862E-18 | - |
| Pfam | PF12906 | RING-variant domain | 67 | 114 | 4.7E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 62 | 118 | 3.24E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 126 | 4.9E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 66 | 115 | 1.2E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 59 | 121 | 20.013418 | IPR011016 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_017646355.1 | PREDICTED: E3 ubiquitin-protein ligase MARCH8 [Gossypium arboreum] | 0 |
| TrEMBL | A0A6P4QJM1 | E3 ubiquitin-protein ligase MARCH8 OS=Gossypium arboreum OX=29729 GN=LOC108486689 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology