Basic Information
Locus ID:
nbisL1-mrna-7438
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000106F_pilon | 4003419 | 4004891 | + | nbisL1-mrna-7438 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 54,812.94 Da | 46.64 | 84.14 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 309 | 373 | 1.39005E-38 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 315 | 360 | 1.7E-10 | IPR011598 |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 25 | 213 | 1.1E-52 | IPR025610 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 303 | 373 | 1.31E-17 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 309 | 376 | 1.2E-16 | IPR036638 |
| SMART | SM00353 | finulus | 317 | 366 | 4.1E-16 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 311 | 360 | 16.89459 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 283 | - | - |
| Coils | Coil | Coil | 357 | 377 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00870.1 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein. | 0 |
| RefSeq | XP_021647373.1 | transcription factor MYC2-like [Hevea brasiliensis] | 0 |
| O23090 | Transcription factor bHLH14 OS=Arabidopsis thaliana OX=3702 GN=BHLH14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2NYG9 | BHLH domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology