Basic Information
Locus ID:
nbisL1-mrna-7428
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000106F_pilon | 3891289 | 3902853 | - | nbisL1-mrna-7428 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 100,254.44 Da | 48.60 | 104.59 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 165 | 206 | 9.5236E-21 | - |
| Pfam | PF04564 | U-box domain | 165 | 231 | 5.3E-17 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 775 | 897 | 2.09E-14 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 335 | 815 | 7.86E-34 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 154 | 231 | 2.56E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 238 | 5.9E-25 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 767 | 905 | 2.2E-14 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 532 | 750 | 1.2E-22 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 239 | 531 | 4.6E-29 | IPR011989 |
| SMART | SM00185 | arm_5 | 819 | 859 | 92.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 431 | 471 | 6.6 | IPR000225 |
| SMART | SM00185 | arm_5 | 701 | 741 | 150.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 164 | 227 | 6.4E-25 | IPR003613 |
| SMART | SM00185 | arm_5 | 652 | 698 | 350.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 265 | 305 | 33.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 774 | 815 | 33.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 160 | 234 | 28.93605 | IPR003613 |
| Coils | Coil | Coil | 39 | 59 | - | - |
| Coils | Coil | Coil | 244 | 264 | - | - |
| Coils | Coil | Coil | 95 | 122 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_012083144.1 | U-box domain-containing protein 44 [Jatropha curcas] | 0 |
| Q9LM76 | U-box domain-containing protein 44 OS=Arabidopsis thaliana OX=3702 GN=PUB44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JR89 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10276, jg29483 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006200, pistato.v30165330 |
| Apiaceae | Apium graveolens | 1 | Ag11G03591 |
| Arecaceae | Cocos nucifera | 1 | scaffold021460G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.421.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26855, Ftri5G33561 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1451 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2849 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9626 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017527 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1687 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5412 |
| Salicaceae | Populus euphratica | 6 | populus_peu27526, populus_peu27527, populus_peu27984 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132632125, gene-LOC132644366, gene-LOC132645405 |
| Solanaceae | Solanum chilense | 2 | SOLCI000591400, SOLCI005051300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008446 |