Basic Information
Locus ID:
nbisL1-mrna-7325
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 1842394 | 1857350 | + | nbisL1-mrna-7325 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 158,196.19 Da | 38.29 | 76.73 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 17 | 297 | 2.06746E-67 | - |
| CDD | cd13169 | RanBD_NUP50_plant | 1285 | 1401 | 3.63983E-64 | - |
| Pfam | PF00638 | RanBP1 domain | 1283 | 1396 | 1.9E-17 | IPR000156 |
| Pfam | PF04053 | Coatomer WD associated region | 319 | 763 | 8.5E-163 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 133 | 171 | 2.2E-4 | IPR001680 |
| Pfam | PF08911 | NUP50 (Nucleoporin 50 kDa) | 1012 | 1073 | 4.0E-16 | IPR015007 |
| Pfam | PF00400 | WD domain, G-beta repeat | 91 | 127 | 1.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 220 | 256 | 1.0E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 177 | 215 | 7.8E-6 | IPR001680 |
| SUPERFAMILY | SSF50729 | PH domain-like | 1275 | 1399 | 1.05E-28 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 297 | 6.83E-78 | IPR036322 |
| SUPERFAMILY | SSF101898 | NHL repeat | 221 | 492 | 1.52E-19 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 300 | 1.2E-111 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 590 | 798 | 8.2E-81 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 1214 | 1398 | 7.4E-35 | IPR011993 |
| SMART | SM00320 | WD40_4 | 218 | 257 | 3.3E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 43 | 4.0 | IPR001680 |
| SMART | SM00160 | ranbd_3 | 1275 | 1398 | 4.7E-15 | IPR000156 |
| SMART | SM00320 | WD40_4 | 131 | 171 | 2.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 174 | 215 | 8.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 46 | 85 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 88 | 127 | 9.7E-9 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 172 | 11.207411 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 225 | 256 | 12.710129 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 180 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50196 | Ran binding domain type 1 profile. | 1274 | 1404 | 17.616856 | IPR000156 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 95 | 127 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 225 | 266 | 15.855363 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 95 | 127 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 224 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 218 | 9.045603 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 202 | 216 | 5.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 244 | 258 | 5.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 158 | 172 | 5.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 891 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1008 | 1044 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1127 | 1149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1096 | 1112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 889 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1155 | 1186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1014 | 1044 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1056 | 1186 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52360.1 | Coatomer, beta' subunit. | 0 |
| RefSeq | XP_021674371.1 | coatomer subunit beta'-2-like isoform X1 [Hevea brasiliensis] | 0 |
| Q9C827 | Coatomer subunit beta'-2 OS=Arabidopsis thaliana OX=3702 GN=At1g52360 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A6LLG0 | RanBD1 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_022511 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology