Basic Information
Locus ID:
nbisL1-mrna-7321
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Seven transmembrane domain-containing tyrosine-protein kinase 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000106F_pilon | 2979186 | 2981292 | + | nbisL1-mrna-7321 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 19,413.53 Da | 43.19 | 83.20 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 41 | 118 | 2.0E-10 | IPR020683 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 138 | 170 | 4.77E-6 | IPR011009 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 25 | 119 | 6.58E-20 | IPR036770 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 134 | 177 | 9.9E-7 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 9 | 133 | 7.4E-22 | IPR036770 |
| SMART | SM00248 | ANK_2a | 91 | 121 | 2100.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 58 | 87 | 4.7E-5 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 58 | 90 | 13.624269 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 58 | 90 | 12.248772 | - |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 144 | 165 | - | IPR017441 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37500.3 | - | 0 |
| RefSeq | XP_021653079.1 | serine/threonine-protein kinase STY8-like [Hevea brasiliensis] | 0 |
| Q94A76 | Potassium channel GORK OS=Arabidopsis thaliana OX=3702 GN=GORK PE=1 SV=2 | 0 | |
| TrEMBL | A0A834YDP7 | Protein kinase domain-containing protein OS=Tetracentron sinense OX=13715 GN=HHK36_027723 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29348 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30010930 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1310.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G14906 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6135, nbisL1-mrna-9505 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016722 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.488 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21756 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-7321, nbisL1-mrna-7322, nbisL1-mrna-7323 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.269 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017523 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19640 |
| Salicaceae | Populus euphratica | 1 | populus_peu31675 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610332 |
| Solanaceae | Solanum chilense | 1 | SOLCI005577300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107032428 |