Basic Information
Locus ID:
nbisL1-mrna-7310
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 18708593 | 18720429 | + | nbisL1-mrna-7310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.05 | 135,327.84 Da | 47.38 | 75.48 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 461 | 645 | 2.51398E-86 | - |
| Pfam | PF00570 | HRDC domain | 998 | 1066 | 4.9E-15 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 751 | 832 | 1.1E-15 | IPR032284 |
| Pfam | PF09382 | RQC domain | 840 | 955 | 8.3E-24 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 497 | 625 | 1.7E-8 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 662 | 752 | 6.3E-6 | IPR001650 |
| SUPERFAMILY | SSF47819 | HRDC-like | 997 | 1071 | 1.18E-14 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 644 | 883 | 5.77E-38 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 447 | 638 | 3.85E-30 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 434 | 645 | 2.4E-73 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 993 | 1082 | 1.3E-23 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 646 | 739 | 1.1E-24 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 775 | 961 | 1.5E-39 | IPR036388 |
| SMART | SM00956 | RQC_2 | 842 | 953 | 1.6E-27 | IPR018982 |
| SMART | SM00341 | hrdc7 | 994 | 1076 | 1.6E-7 | IPR002121 |
| SMART | SM00487 | ultradead3 | 466 | 654 | 1.5E-14 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 462 | 737 | 7.5E-100 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 466 | 638 | 16.394091 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 663 | 836 | 10.5886 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 994 | 1076 | 18.792223 | IPR002121 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 678 | 720 | 8.880201 | IPR001763 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 577 | 586 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1084 | 1101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 989 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1078 | 1130 | - | - |
| Coils | Coil | Coil | 330 | 357 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_021658967.1 | ATP-dependent DNA helicase Q-like 4A [Hevea brasiliensis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A251K0S2 | DNA helicase OS=Manihot esculenta OX=3983 GN=MANES_10G122800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology