Basic Information
Locus ID:
nbisL1-mrna-7275
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 17953226 | 17962756 | - | nbisL1-mrna-7275 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 125,158.17 Da | 41.62 | 80.83 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 920 | 953 | 0.0063 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 455 | 489 | 1.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 343 | 532 | 1.56E-24 | IPR036322 |
| SUPERFAMILY | SSF63829 | Calcium-dependent phosphotriesterase | 875 | 1113 | 1.93E-12 | - |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 468 | 958 | 4.55E-43 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 546 | 802 | 2.5E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 328 | 544 | 5.9E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 813 | 1089 | 1.1E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 871 | 911 | 3.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 536 | 579 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 381 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 448 | 489 | 3.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 831 | 868 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 492 | 533 | 0.41 | IPR001680 |
| SMART | SM00320 | WD40_4 | 914 | 953 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 402 | 442 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 582 | 622 | 0.58 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.2E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1005 | 1046 | 4.5 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 921 | 953 | 11.778342 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 921 | 953 | 9.836508 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.141059 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 600 | 631 | 8.870959 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 455 | 498 | 10.541869 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 476 | 490 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1102 | 1138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1114 | 1138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 303 | - | - |
| Coils | Coil | Coil | 1135 | 1138 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top half of the embryo during the transition stage of embryogenesis. It can also interact with IAA12 through the EAR domain of IAA12 and the CTLH domain of TPL. The ability of IAA12 to repress transcription is diminished in a tpl-1 mutant background. | 0 |
| RefSeq | XP_015573796.2 | topless-related protein 1 isoform X1 [Ricinus communis] | 0 |
| Q94AI7 | Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1 | 0 | |
| TrEMBL | A0A251LIZ1 | TOPLESS OS=Manihot esculenta OX=3983 GN=MANES_04G108600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology