Basic Information
Locus ID:
nbisL1-mrna-7264
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 001820F_pilon | 2979911 | 2983065 | - | nbisL1-mrna-7264 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 38,318.05 Da | 41.87 | 68.58 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 189 | 317 | 2.90842E-64 | - |
| CDD | cd16571 | RING-HC_SIAHs | 73 | 111 | 9.10712E-15 | - |
| Pfam | PF03145 | Seven in absentia protein family | 117 | 316 | 2.0E-76 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 128 | 320 | 2.16E-46 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 69 | 115 | 7.88E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 127 | 6.1E-6 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 182 | 316 | 3.4E-36 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 181 | 1.6E-16 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 128 | 188 | 14.262304 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 75 | 111 | 9.464913 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 40 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_012083204.1 | E3 ubiquitin-protein ligase SINAT3 [Jatropha curcas] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2KBS4 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology